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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015788617.1_cds_XP_016471638.1_596
CDS Infomation

[gene=LOC107793657] [db_xref=GeneID:107793657] [protein=bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X2] [frame=2] [partial=5'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016471638.1] [location=join(<1856..1961,3258..3476,5592..5938,6246..6309,6454..6559,6644..6781,6913..7061,9381..9543,9645..9685)] [gbkey=CDS]
Sequence

CCCACTTGGGAGGGTGGTCAGTATGCTGGTGATGAAGCAAGTCGACTGGATGCACTTCGA
TTAGCAATGAAGTTGGGAGCTGATTATATTGATGTTGAGCTAAAGGCTATTGACGAGTTC
AATACTGCTCTACATGGAAATAAGTCAGCAAAATGCAAAGTTATTGTTTCTTCTCACAAC
TATGATAATACACCATCATCTGAGGAGCTCGGCAATCTAGTAGCAAGAATACAGGCATCT
GGAGCTGACATTGTGAAGTTTGCAACAACTGCACTGGATATCACCGATGTTGCACGTGTA
TTCCAAATTACTGTACATTCTCAAGTACCAATAATAGCCATGGTCATGGGAGAGAAGGGT
TTGATGTCTCGAATACTTTGTCCAAAATTTGGTGGATACCTCACATTTGGTACTCTTGAA
GTAGGAAAAGTTTCGGCTCCTGGGCAACCAACAATTGAAGATCTTTTGAGTATATACAAT
TTCAGACAGTTGGGACCAGATACCAGAATATTTGGCATTATCGGGAAGCCTGTTAGCCAT
AGCAAATCACCTTTATTGTATAATGAAGCTTTCAGATCAGTTGGGTTTAATGGTGTTTAT
ATGCCTTTGCTGGTAGATGATGTTGCAAATTTCTTTCGGACTTACTCATCTTTAGATTTT
GCTGGCTTCAGCTGTACAATTCCTCACAAGGAAGCCATTGTCGACTGCTGCGATGAAGTT
AATCCTACCGCTAAGTTGATAGGGGCTGTCAATTGTGTCGTAAGGCGACCTGATGGGAAG
TTGTTTGGTTGCAATACAGACTATGTGGGTGCAATCTCCGCCATTGAAGAGGCGTTGCAA
GGCTCACAACCTATTATGTCTGGGTCACCCTTAGCTCGTAAATTGTTTGTGGTCATTGGT
GCTGGTGGCGCTGGCAAGGCACTTGCTTATGGTGCAAAGGAAAAGGGGGCTCGGGTGGTG
ATTGCTAACCGTACCTATGAACGGGCGAGAGAACTTGCTGATGTAGTTGGAGGTCAGGCT
CTGTCTCTTGACGAGCTTAGCAATTTCCATCCAGAAAATGACATGATTCTTGCAAATACC
ACCTCCATTGGCATGCAACCAAAGGTTGATGATACACCAATCTCTAAGGAAGCTTTGAGG
TACTACTCACTTGTATTTGATGCTGTTTATACGCCCAAAATCACTAGACTCTTGCGCGAA
GCTCAAGAGAGTGGAGTAAAAATTGTAACCGGAGTTGAAATGTTTATCGGGCAGGCATAT
GAACAATATGAGAGATTTACAGGGTTGCCAGCTCCAAAGGAACTTTTCAAGAAAATTATG
GCTGGATATTGA

Peptide Sequence

PEP ID

XP_016471638.1
PEP Infomation

PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X2 [Nicotiana tabacum]
Sequence

MELVVESGVKKMEEGEATRRNQTLICAPIMADTVDQMLNLMQKAKISGADLVEVRLDSLK
SFNPQSNINTIIKQSPLPTLFTYRPTWEGGQYAGDEASRLDALRLAMKLGADYIDVELKA
IDEFNTALHGNKSAKCKVIVSSHNYDNTPSSEELGNLVARIQASGADIVKFATTALDITD
VARVFQITVHSQVPIIAMVMGEKGLMSRILCPKFGGYLTFGTLEVGKVSAPGQPTIEDLL
SIYNFRQLGPDTRIFGIIGKPVSHSKSPLLYNEAFRSVGFNGVYMPLLVDDVANFFRTYS
SLDFAGFSCTIPHKEAIVDCCDEVNPTAKLIGAVNCVVRRPDGKLFGCNTDYVGAISAIE
EALQGSQPIMSGSPLARKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERARELADVV
GGQALSLDELSNFHPENDMILANTTSIGMQPKVDDTPISKEALRYYSLVFDAVYTPKITR
LLREAQESGVKIVTGVEMFIGQAYEQYERFTGLPAPKELFKKIMAGY

Transcript Sequence

Gene sequence data has not been registered.